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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
ChIP-seq
4
DNase-seq
3
single cell RNA-seq
2
Hi-C
1
RRBS
Assay category
9
DNA binding
4
DNA accessibility
3
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
6
control
3
RNA binding protein
3
histone
3
histone modification
3
narrow histone mark
3
transcription factor
Date released
9
November, 2017
6
July, 2019
4
June, 2019
Available data
18
bigWig
16
bam
10
bed broadPeak
10
bed narrowPeak
10
bigBed broadPeak
10
bigBed narrowPeak
9
fastq
6
bed bed3+
3
tsv
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
Organism
19
Homo sapiens
Biosample type
265
tissue
19
primary cell
Organ
406
epithelium
346
pancreas
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
19
AMP
Genome assembly (visualization)
19
hg19
13
GRCh38
Lab
19
AMP-T2D consortium
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
19 results
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ChIP-seq
DNase-seq
single cell RNA-seq
Hi-C
RRBS
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the hippocampus
1
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