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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
ChIP-seq
17
total RNA-seq
4
small RNA-seq
2
pCHi-C
1
RRBS
Assay category
209
DNA binding
DNA accessibility
21
Transcription
1
DNA methylation
Target of assay
184
histone
184
histone modification
114
narrow histone mark
70
broad histone mark
25
control
Date released
85
October, 2019
82
November, 2017
28
May, 2019
15
October, 2017
12
February, 2020
9
July, 2019
2
March, 2020
Available data
196
bam
172
bigWig
164
bed narrowPeak
118
tagAlign
88
bigBed narrowPeak
23
tsv
9
bed broadPeak
9
fastq
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
233
Homo sapiens
Biosample type
233
tissue
16
primary cell
Organ
539
connective tissue
480
adipose tissue
423
pancreas
336
liver
233
brain
207
heart
149
kidney
146
bone element
90
blood vessel
90
vasculature
78
limb
48
musculature of body
40
nerve
32
artery
25
eye
23
spleen
10
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
233
AMP
Genome assembly (visualization)
174
GRCh38
124
hg19
Lab
233
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
233 results
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ChIP-seq
total RNA-seq
small RNA-seq
pCHi-C
RRBS
tissue
layer of hippocampus
23
brain
20
1
1
substantia nigra
16
1
temporal lobe
15
1
1
caudate nucleus
15
1
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