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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
208
ChIP-seq
27
DNase-seq
17
total RNA-seq
4
small RNA-seq
3
ATAC-seq
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
208
DNA binding
31
DNA accessibility
21
Transcription
1
DNA methylation
Target of assay
183
histone
183
histone modification
113
narrow histone mark
70
broad histone mark
25
control
Date released
84
October, 2019
82
November, 2017
28
May, 2019
25
June, 2019
16
October, 2017
12
February, 2020
11
July, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
225
bam
201
bigWig
191
bed narrowPeak
117
tagAlign
116
bigBed narrowPeak
36
bed broadPeak
27
bed bed3+
27
bigBed broadPeak
23
tsv
12
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
263
Homo sapiens
Biosample type
263
tissue
21
primary cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
263
AMP
Genome assembly (visualization)
202
GRCh38
142
hg19
Lab
263
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
pituitary gland
BIOSAMPLE
ASSAY
263 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
pCHi-C
FAIRE-seq
RRBS
tissue
brain
20
14
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
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