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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
RRBS
1
ATAC-seq
1
FAIRE-seq
Assay category
123
DNA binding
12
Transcription
2
DNA accessibility
2
DNA methylation
Target of assay
117
histone
117
histone modification
92
narrow histone mark
25
broad histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
78
October, 2019
25
May, 2019
15
November, 2017
14
July, 2019
6
October, 2017
1
February, 2023
Available data
159
bigWig
155
bam
141
bed narrowPeak
65
bigBed narrowPeak
43
tagAlign
37
bed broadPeak
28
bigBed broadPeak
bed bed3+
17
fastq
12
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
139
Homo sapiens
Biosample type
126
tissue
13
primary cell
Organ
631
pancreas
612
liver
563
connective tissue
420
adipose tissue
296
epithelium
161
heart
153
vasculature
149
blood vessel
139
brain
89
artery
70
bone element
60
limb
58
kidney
55
blood
55
bodily fluid
39
musculature of body
30
eye
29
nerve
26
embryo
15
vein
13
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
139
AMP
Genome assembly (visualization)
185
GRCh38
139
hg19
Lab
139
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
139 results
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ChIP-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
RRBS
ATAC-seq
FAIRE-seq
tissue
temporal lobe
13
1
1
angular gyrus
14
brain
11
1
1
1
superior frontal gyrus
4
frontal cortex
1
1
1
+ See 66 more…
primary cell
choroid plexus epithelial cell
3
1
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
cerebellar granule cell
2
Purkinje cell
1
See all biosamples
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