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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
13
total RNA-seq
3
ATAC-seq
2
pCHi-C
Assay category
218
DNA binding
13
Transcription
3
DNA accessibility
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
28
May, 2019
16
October, 2017
July, 2019
12
February, 2020
2
March, 2020
1
February, 2023
Available data
230
bam
206
bigWig
202
bed narrowPeak
126
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
bed bed3+
21
fastq
15
tsv
1
bed bed3
1
tagAlign bed3+
Organism
236
Homo sapiens
Biosample type
227
tissue
9
primary cell
Organ
911
pancreas
769
liver
640
connective tissue
492
epithelium
473
adipose tissue
298
heart
265
kidney
236
brain
213
vasculature
210
blood vessel
159
bone element
134
artery
81
limb
69
blood
69
bodily fluid
56
eye
52
musculature of body
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
236
AMP
Genome assembly (visualization)
173
GRCh38
125
hg19
Lab
236
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
bed bed3+
month_released!
July, 2019
BIOSAMPLE
ASSAY
236 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
tissue
layer of hippocampus
23
brain
20
1
1
substantia nigra
16
1
caudate nucleus
15
1
angular gyrus
15
+ See 70 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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