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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
238
ChIP-seq
22
total RNA-seq
5
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
238
DNA binding
29
Transcription
6
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
199
histone
199
histone modification
117
narrow histone mark
82
broad histone mark
42
control
Date released
126
October, 2019
79
November, 2017
28
May, 2019
18
July, 2019
13
February, 2020
13
October, 2017
2
March, 2020
1
February, 2023
Available data
285
bam
253
bigWig
230
bed narrowPeak
153
bigBed narrowPeak
118
tagAlign
bed broadPeak
40
bigBed broadPeak
37
bed bed3+
31
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
280
Homo sapiens
Biosample type
270
tissue
10
primary cell
Organ
925
pancreas
728
liver
674
connective tissue
502
epithelium
488
adipose tissue
323
heart
276
kidney
239
brain
219
vasculature
217
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
57
eye
50
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
280
AMP
Genome assembly (visualization)
200
GRCh38
156
hg19
Lab
280
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
280 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
tibial nerve
35
5
1
layer of hippocampus
23
brain
17
1
1
1
temporal lobe
15
1
1
substantia nigra
15
1
+ See 73 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
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