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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
4
ATAC-seq
3
Hi-C
2
RRBS
Assay category
48
DNA binding
4
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
28
control
20
histone
20
histone modification
11
narrow histone mark
9
broad histone mark
Date released
27
November, 2017
10
October, 2017
10
October, 2019
6
July, 2019
3
May, 2019
1
February, 2023
Available data
243
bam
222
bigWig
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
57
Homo sapiens
Biosample type
50
tissue
7
primary cell
Organ
315
pancreas
217
epithelium
176
liver
147
kidney
131
connective tissue
93
bone element
77
adipose tissue
57
brain
35
vasculature
34
heart
33
blood vessel
27
musculature of body
23
eye
23
limb
19
lung
15
blood
15
bodily fluid
11
nerve
10
spleen
9
artery
9
embryo
9
vein
8
skeleton
4
gonad
4
ovary
1
bone marrow
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
57
AMP
Genome assembly (visualization)
11
hg19
4
GRCh38
Lab
57
AMP-T2D consortium
Audit category:
1
missing controlled_by
files.file_type!
bed narrowPeak
tsv
BIOSAMPLE
ASSAY
57 results
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ChIP-seq
ATAC-seq
Hi-C
RRBS
tissue
brain
9
1
1
cingulate gyrus
7
layer of hippocampus
6
substantia nigra
4
caudate nucleus
3
+ See 14 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
brain pericyte
1
See all biosamples
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