Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
pCHi-C
Assay category
48
DNA binding
24
Transcription
4
DNA accessibility
3D chromatin structure
Target of assay
31
control
20
histone
20
histone modification
11
narrow histone mark
9
broad histone mark
Date released
27
November, 2017
12
February, 2020
12
July, 2019
11
October, 2019
10
October, 2017
3
May, 2019
2
March, 2020
1
February, 2023
Available data
243
bam
219
bigWig
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
26
tsv
21
fastq
2
bed bedMethyl
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
78
Homo sapiens
Biosample type
72
tissue
6
primary cell
Organ
717
pancreas
605
connective tissue
476
adipose tissue
359
epithelium
343
liver
191
heart
166
kidney
151
bone element
96
vasculature
95
blood vessel
78
brain
67
artery
27
eye
26
musculature of body
25
limb
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
9
spleen
8
skeleton
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
78
AMP
Genome assembly (visualization)
18
hg19
16
GRCh38
Lab
78
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bigBed bedMethyl
bed narrowPeak
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
78 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
pCHi-C
tissue
brain
9
1
1
cingulate gyrus
7
layer of hippocampus
6
cerebellum (Hemisphere)
2
1
1
1
substantia nigra
4
1
+ See 24 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
See all biosamples
Download