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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
209
DNA binding
21
Transcription
5
DNA accessibility
1
DNA methylation
Target of assay
184
histone
184
histone modification
114
narrow histone mark
70
broad histone mark
25
control
Date released
86
October, 2019
82
November, 2017
28
May, 2019
16
October, 2017
12
February, 2020
11
July, 2019
2
March, 2020
1
February, 2023
Available data
226
bam
202
bigWig
192
bed narrowPeak
118
tagAlign
116
bigBed narrowPeak
36
bed broadPeak
27
bed bed3+
bigBed broadPeak
23
tsv
12
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
238
Homo sapiens
Biosample type
238
tissue
primary cell
Organ
716
liver
642
connective tissue
593
pancreas
487
adipose tissue
313
heart
250
kidney
238
brain
194
blood vessel
194
vasculature
158
bone element
135
artery
118
epithelium
86
limb
61
blood
61
bodily fluid
53
eye
50
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
238
AMP
Genome assembly (visualization)
176
GRCh38
126
hg19
Lab
238
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
bigBed broadPeak
biosample_type!
primary cell
BIOSAMPLE
ASSAY
238 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
pCHi-C
FAIRE-seq
RRBS
tissue
brain
20
1
1
1
layer of hippocampus
23
substantia nigra
16
1
temporal lobe
15
1
1
caudate nucleus
15
1
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