Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
124
ChIP-seq
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
124
DNA binding
7
Transcription
4
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
96
histone
96
histone modification
84
narrow histone mark
31
control
12
broad histone mark
Date released
85
October, 2019
28
November, 2017
13
July, 2019
10
October, 2017
3
May, 2019
2
March, 2020
1
February, 2023
Available data
238
bam
217
bigWig
203
bed narrowPeak
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
21
fastq
9
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
142
Homo sapiens
Biosample type
132
tissue
10
primary cell
Organ
452
pancreas
317
epithelium
244
liver
190
kidney
187
heart
182
connective tissue
142
brain
97
bone element
92
vasculature
90
blood vessel
83
adipose tissue
60
artery
43
musculature of body
36
eye
31
limb
23
embryo
20
lung
15
blood
15
bodily fluid
12
nerve
12
skeleton
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
142
AMP
Genome assembly (visualization)
94
hg19
86
GRCh38
Lab
142
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bigBed narrowPeak
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
142 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
tissue
brain
14
1
1
cingulate gyrus
8
layer of hippocampus
7
cerebellum (Hemisphere)
3
1
1
substantia nigra
5
+ See 69 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
See all biosamples
Download