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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
ChIP-seq
12
total RNA-seq
ATAC-seq
2
RRBS
2
pCHi-C
Assay category
45
DNA binding
12
Transcription
2
DNA methylation
Target of assay
25
control
20
histone
20
histone modification
11
narrow histone mark
9
broad histone mark
Date released
24
November, 2017
12
February, 2020
9
October, 2017
9
October, 2019
3
May, 2019
2
July, 2019
2
March, 2020
Available data
241
bam
bigWig
203
bed narrowPeak
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
20
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
61
Homo sapiens
Biosample type
60
tissue
1
primary cell
Organ
212
pancreas
167
liver
154
epithelium
148
kidney
126
heart
98
connective tissue
89
bone element
64
adipose tissue
61
brain
38
vasculature
37
blood vessel
28
musculature of body
27
eye
25
limb
20
lung
14
blood
14
bodily fluid
13
artery
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
61
AMP
Genome assembly (visualization)
4
hg19
2
GRCh38
Lab
61
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bigBed narrowPeak
bigWig
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
61 results
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ChIP-seq
total RNA-seq
RRBS
pCHi-C
tissue
brain
9
1
cingulate gyrus
7
layer of hippocampus
6
substantia nigra
4
1
caudate nucleus
3
1
+ See 21 more…
primary cell
choroid plexus epithelial cell
1
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