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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
12
total RNA-seq
2
ATAC-seq
2
RRBS
2
pCHi-C
Assay category
12
Transcription
2
DNA accessibility
2
DNA methylation
Date released
12
February, 2020
2
July, 2019
2
March, 2020
1
February, 2023
1
October, 2019
Available data
bigWig
47
bam
35
bed bed3+
33
bed narrowPeak
bigBed narrowPeak
32
bed broadPeak
32
bigBed broadPeak
26
tsv
3
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
18
Homo sapiens
Biosample type
17
tissue
1
primary cell
Organ
266
pancreas
210
kidney
195
epithelium
149
heart
101
bone element
58
vasculature
57
blood vessel
52
eye
49
liver
47
artery
36
connective tissue
20
lung
18
brain
16
musculature of body
16
skeleton
13
limb
12
adipose tissue
8
blood
8
bodily fluid
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
18
AMP
Genome assembly (visualization)
3
hg19
Lab
18
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bigBed narrowPeak
bigWig
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
18 results
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total RNA-seq
ATAC-seq
RRBS
pCHi-C
tissue
Ammon's horn
1
1
brain
1
1
amygdala
1
anterior cingulate cortex
1
caudate nucleus
1
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primary cell
choroid plexus epithelial cell
1
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