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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
ChIP-seq
45
ATAC-seq
15
total RNA-seq
6
single cell RNA-seq
3
Hi-C
3
pCHi-C
2
RRBS
1
WGBS
Assay category
68
DNA binding
45
DNA accessibility
21
Transcription
3
3D chromatin structure
3
DNA methylation
Target of assay
45
control
23
histone
23
histone modification
12
narrow histone mark
11
broad histone mark
Date released
36
February, 2023
24
November, 2017
21
October, 2019
15
February, 2020
14
May, 2019
10
February, 2021
9
October, 2017
6
August, 2021
5
March, 2020
3
July, 2019
Available data
420
bam
bigWig
330
bed narrowPeak
bigBed narrowPeak
124
tagAlign
94
tsv
58
bed broadPeak
49
bigBed broadPeak
45
bed bed3+
21
fastq
4
hdf5
3
bed bedMethyl
3
bigBed bedMethyl
3
hic
2
bedpe bed3+
1
bed bed3
1
tagAlign bed3+
1
tar
Organism
143
Homo sapiens
Biosample type
125
tissue
10
cell line
8
primary cell
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
63
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
143
AMP
Genome assembly (visualization)
45
GRCh38
16
hg19
Lab
143
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bigBed narrowPeak
bigWig
BIOSAMPLE
ASSAY
143 results
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ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
Hi-C
pCHi-C
RRBS
WGBS
tissue
coronary artery
2
35
1
brain
9
1
1
aorta
2
4
1
1
1
cingulate gyrus
7
layer of hippocampus
6
+ See 28 more…
cell line
smooth muscle cell of the coronary artery
2
8
primary cell
endothelial cell of umbilical vein
5
2
choroid plexus epithelial cell
1
See all biosamples
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