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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
17
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
123
DNA binding
24
Transcription
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
95
histone
95
histone modification
83
narrow histone mark
31
control
12
broad histone mark
Date released
84
October, 2019
28
November, 2017
16
July, 2019
12
February, 2020
9
October, 2017
3
May, 2019
2
March, 2020
Available data
208
bam
187
bigWig
170
bed narrowPeak
118
tagAlign
bigBed narrowPeak
26
tsv
18
fastq
15
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
tagAlign bed3+
Organism
154
Homo sapiens
Biosample type
144
tissue
10
primary cell
Organ
714
pancreas
635
connective tissue
477
adipose tissue
410
liver
365
epithelium
252
heart
167
kidney
154
brain
147
bone element
107
vasculature
105
blood vessel
71
artery
47
musculature of body
37
embryo
30
limb
27
eye
16
nerve
11
spleen
10
lung
9
vein
6
blood
6
bodily fluid
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
154
AMP
Genome assembly (visualization)
97
hg19
88
GRCh38
Lab
154
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bigBed narrowPeak
tagAlign bed3+
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
154 results
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ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
tissue
brain
14
1
1
cingulate gyrus
8
layer of hippocampus
7
substantia nigra
5
1
cerebellum (Hemisphere)
3
1
1
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primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
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