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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
124
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
Assay category
124
DNA binding
24
Transcription
4
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
96
histone
96
histone modification
84
narrow histone mark
31
control
12
broad histone mark
Date released
86
October, 2019
28
November, 2017
17
July, 2019
12
February, 2020
10
October, 2017
March, 2020
3
May, 2019
1
February, 2023
Available data
243
bam
222
bigWig
203
bed narrowPeak
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
24
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
157
Homo sapiens
Biosample type
147
tissue
10
primary cell
Organ
841
pancreas
654
connective tissue
480
adipose tissue
442
epithelium
430
liver
292
heart
248
kidney
159
bone element
157
brain
149
vasculature
147
blood vessel
116
artery
55
eye
44
musculature of body
38
limb
37
embryo
19
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
11
spleen
8
vein
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
0
mammary gland
Project
157
AMP
Genome assembly (visualization)
99
hg19
91
GRCh38
Lab
157
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bigBed narrowPeak
month_released!
March, 2020
BIOSAMPLE
ASSAY
157 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
tissue
brain
14
1
1
1
cingulate gyrus
8
layer of hippocampus
7
cerebellum (Hemisphere)
3
1
1
1
substantia nigra
5
1
+ See 71 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
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