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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
28
DNA binding
24
Transcription
4
DNA accessibility
2
DNA methylation
Target of assay
histone
96
histone modification
84
narrow histone mark
31
control
12
broad histone mark
Date released
15
November, 2017
14
July, 2019
12
February, 2020
9
October, 2019
4
October, 2017
3
May, 2019
2
March, 2020
1
February, 2023
Available data
77
bam
53
bigWig
36
bed narrowPeak
bigBed narrowPeak
35
bed broadPeak
35
bigBed broadPeak
32
bed bed3+
26
tsv
19
tagAlign
11
fastq
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
60
Homo sapiens
Biosample type
53
tissue
7
primary cell
Organ
744
pancreas
586
connective tissue
450
adipose tissue
376
epithelium
362
liver
255
heart
241
kidney
159
bone element
143
vasculature
141
blood vessel
116
artery
60
brain
53
eye
33
limb
25
embryo
24
musculature of body
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
2
intestine
2
pericardium
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
60
AMP
Genome assembly (visualization)
18
hg19
14
GRCh38
Lab
60
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bigBed narrowPeak
target.investigated_as!
histone
assay_title!
Hi-C
BIOSAMPLE
ASSAY
60 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
RRBS
pCHi-C
tissue
brain
3
1
1
1
cerebellum (Hemisphere)
2
1
1
1
temporal lobe
2
1
1
caudate nucleus
2
1
frontal cortex
2
1
+ See 22 more…
primary cell
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
See all biosamples
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