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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
2
RRBS
2
pCHi-C
Assay category
21
Transcription
4
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
histone
96
histone modification
84
narrow histone mark
control
12
broad histone mark
Date released
14
July, 2019
12
February, 2020
2
March, 2020
2
October, 2019
1
February, 2023
1
October, 2017
Available data
50
bigWig
47
bam
36
bed narrowPeak
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
23
tsv
6
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
32
Homo sapiens
Biosample type
28
tissue
4
primary cell
Organ
700
pancreas
552
connective tissue
426
adipose tissue
354
epithelium
258
liver
238
heart
230
kidney
159
bone element
126
vasculature
125
blood vessel
107
artery
52
eye
32
brain
24
musculature of body
20
limb
20
lung
18
embryo
16
skeleton
9
blood
9
bodily fluid
6
nerve
4
spleen
2
intestine
2
pericardium
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
32
AMP
Genome assembly (visualization)
15
hg19
11
GRCh38
Lab
32
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bigBed narrowPeak
target.investigated_as!
histone
control
BIOSAMPLE
ASSAY
32 results
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total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
pCHi-C
tissue
brain
1
1
1
cerebellum (Hemisphere)
1
1
1
frontal cortex
2
1
Ammon's horn
1
1
cerebellum
2
+ See 13 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
See all biosamples
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