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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
ChIP-seq
2
ATAC-seq
2
RRBS
2
pCHi-C
Assay category
46
DNA binding
Transcription
2
DNA accessibility
2
DNA methylation
Target of assay
25
control
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
Date released
25
November, 2017
10
October, 2019
9
October, 2017
3
May, 2019
2
July, 2019
2
March, 2020
1
February, 2023
Available data
231
bam
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
tsv
1
bed bed3
1
tagAlign bed3+
Organism
52
Homo sapiens
Biosample type
51
tissue
1
primary cell
Organ
250
pancreas
168
epithelium
138
liver
110
kidney
107
connective tissue
97
bone element
73
heart
72
vasculature
71
blood vessel
63
adipose tissue
52
artery
52
brain
36
eye
28
limb
25
musculature of body
14
blood
14
bodily fluid
12
skeleton
11
lung
11
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
52
AMP
Genome assembly (visualization)
5
hg19
3
GRCh38
Lab
52
AMP-T2D consortium
Audit category:
1
missing controlled_by
files.file_type!
bigWig
assay_slims!
Transcription
BIOSAMPLE
ASSAY
52 results
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ChIP-seq
ATAC-seq
RRBS
pCHi-C
tissue
brain
9
1
1
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
caudate nucleus
3
+ See 15 more…
primary cell
choroid plexus epithelial cell
1
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