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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
12
total RNA-seq
2
RRBS
2
pCHi-C
1
ATAC-seq
Assay category
37
DNA binding
12
Transcription
2
DNA methylation
1
DNA accessibility
Target of assay
19
histone
19
histone modification
18
control
10
broad histone mark
9
narrow histone mark
Date released
25
November, 2017
12
February, 2020
October, 2019
9
October, 2017
3
May, 2019
2
July, 2019
2
March, 2020
1
February, 2023
Available data
160
bam
bigWig
128
bed narrowPeak
127
bigBed narrowPeak
80
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
25
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
54
Homo sapiens
Biosample type
53
tissue
1
primary cell
Organ
313
pancreas
215
kidney
213
epithelium
168
heart
168
liver
113
connective tissue
101
bone element
70
vasculature
69
blood vessel
66
adipose tissue
54
brain
51
artery
34
eye
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
14
limb
9
spleen
8
embryo
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
54
AMP
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
54
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bigWig
month_released!
October, 2019
BIOSAMPLE
ASSAY
54 results
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ChIP-seq
total RNA-seq
RRBS
pCHi-C
ATAC-seq
tissue
brain
9
1
1
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
1
caudate nucleus
3
1
+ See 14 more…
primary cell
choroid plexus epithelial cell
1
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