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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
ChIP-seq
12
total RNA-seq
2
pCHi-C
1
ATAC-seq
Assay category
44
DNA binding
12
Transcription
1
DNA accessibility
Target of assay
25
control
19
histone
19
histone modification
10
broad histone mark
9
narrow histone mark
Date released
25
November, 2017
12
February, 2020
9
October, 2017
8
October, 2019
3
May, 2019
2
March, 2020
Available data
88
bam
75
tagAlign
bigWig
62
bed narrowPeak
62
bigBed narrowPeak
14
tsv
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
4
fastq
Organism
59
Homo sapiens
Biosample type
59
tissue
Organ
272
pancreas
218
kidney
197
epithelium
161
liver
156
heart
92
connective tissue
89
bone element
69
blood vessel
69
vasculature
63
adipose tissue
59
brain
48
artery
27
eye
25
limb
22
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
9
spleen
7
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
59
AMP
Genome assembly (visualization)
hg19
3
GRCh38
Lab
59
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bigWig
organ_slims!
large intestine
assembly!
hg19
BIOSAMPLE
ASSAY
59 results
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ChIP-seq
total RNA-seq
pCHi-C
ATAC-seq
tissue
brain
9
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
1
caudate nucleus
3
1
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