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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
45
ATAC-seq
14
total RNA-seq
2
RRBS
2
pCHi-C
2
single cell RNA-seq
Assay category
55
DNA binding
45
DNA accessibility
16
Transcription
2
DNA methylation
Target of assay
34
control
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
Date released
36
February, 2023
25
November, 2017
15
October, 2019
14
February, 2020
10
February, 2021
9
October, 2017
5
May, 2019
2
August, 2021
2
July, 2019
2
March, 2020
Available data
345
bam
bigWig
277
bed narrowPeak
152
bigBed narrowPeak
124
tagAlign
84
tsv
51
bed broadPeak
42
bigBed broadPeak
39
bed bed3+
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
120
Homo sapiens
Biosample type
109
tissue
10
cell line
1
primary cell
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
120
AMP
Genome assembly (visualization)
46
GRCh38
13
hg19
Lab
120
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bigWig
BIOSAMPLE
ASSAY
120 results
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ChIP-seq
ATAC-seq
total RNA-seq
RRBS
pCHi-C
single cell RNA-seq
tissue
coronary artery
2
35
1
brain
9
1
1
cingulate gyrus
8
layer of hippocampus
6
tibial artery
5
1
+ See 25 more…
cell line
smooth muscle cell of the coronary artery
2
8
primary cell
choroid plexus epithelial cell
1
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