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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
ChIP-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
Assay category
196
DNA binding
DNA accessibility
12
Transcription
Target of assay
166
histone
166
histone modification
105
narrow histone mark
61
broad histone mark
30
control
3
RNA binding protein
3
transcription factor
Date released
83
October, 2019
78
November, 2017
28
May, 2019
11
July, 2019
8
October, 2017
Available data
208
bam
187
bigWig
170
bed narrowPeak
118
tagAlign
94
bigBed narrowPeak
26
tsv
18
fastq
15
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
208
Homo sapiens
Biosample type
196
tissue
12
primary cell
Organ
673
liver
614
pancreas
579
connective tissue
437
adipose tissue
275
epithelium
208
brain
169
heart
162
vasculature
159
blood vessel
88
artery
70
limb
64
kidney
60
blood
60
bodily fluid
58
bone element
39
nerve
36
embryo
24
musculature of body
22
spleen
17
vein
3
eye
1
pericardium
1
pituitary gland
Project
208
AMP
Genome assembly (visualization)
181
GRCh38
132
hg19
Lab
208
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
208 results
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ChIP-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
tissue
layer of hippocampus
20
temporal lobe
15
1
1
angular gyrus
15
brain
13
1
caudate nucleus
14
+ See 64 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
cerebellar granule cell
2
Purkinje cell
1
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