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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
ChIP-seq
32
DNase-seq
5
total RNA-seq
4
small RNA-seq
single cell RNA-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
196
DNA binding
35
DNA accessibility
9
Transcription
Target of assay
166
histone
166
histone modification
105
narrow histone mark
61
broad histone mark
27
control
3
RNA binding protein
3
transcription factor
Date released
83
October, 2019
78
November, 2017
30
June, 2019
28
May, 2019
10
July, 2019
9
October, 2017
2
November, 2018
Available data
240
bam
219
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
23
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
240
Homo sapiens
Biosample type
226
tissue
14
primary cell
Organ
681
liver
615
pancreas
589
connective tissue
442
adipose tissue
247
epithelium
240
brain
211
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
66
bone element
60
blood
60
bodily fluid
57
musculature of body
42
nerve
36
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
240
AMP
Genome assembly (visualization)
212
GRCh38
152
hg19
Lab
240
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
240 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
FAIRE-seq
tissue
brain
13
14
1
layer of hippocampus
20
temporal lobe
15
1
1
angular gyrus
15
caudate nucleus
14
1
+ See 71 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
astrocyte of the hippocampus
1
brain pericyte
1
See all biosamples
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