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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
179
ChIP-seq
30
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
1
ATAC-seq
1
FAIRE-seq
Assay category
179
DNA binding
32
DNA accessibility
12
Transcription
Target of assay
157
histone
157
histone modification
101
narrow histone mark
56
broad histone mark
25
control
Date released
83
October, 2019
69
November, 2017
30
June, 2019
28
May, 2019
13
July, 2019
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
223
Homo sapiens
Biosample type
215
tissue
8
primary cell
Organ
494
connective tissue
400
adipose tissue
288
pancreas
223
brain
220
liver
211
heart
179
vasculature
177
blood vessel
144
kidney
129
epithelium
114
limb
102
artery
66
bone element
57
musculature of body
42
nerve
20
vein
18
ureter
10
embryo
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
223
AMP
Genome assembly (visualization)
200
GRCh38
138
hg19
Lab
223
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
223 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
ATAC-seq
FAIRE-seq
tissue
layer of hippocampus
20
brain
5
12
1
temporal lobe
15
1
1
angular gyrus
15
caudate nucleus
14
1
+ See 71 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain microvascular endothelial cell
1
+ See 2 more…
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