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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
ChIP-seq
32
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
118
DNA binding
35
DNA accessibility
12
Transcription
Target of assay
106
histone
106
histone modification
83
narrow histone mark
23
broad histone mark
15
control
Date released
83
October, 2019
November, 2017
30
June, 2019
28
May, 2019
13
July, 2019
9
October, 2017
2
November, 2018
Available data
165
bam
156
bigWig
139
bed narrowPeak
64
bigBed narrowPeak
52
tagAlign
35
bed bed3+
35
bed broadPeak
32
bigBed broadPeak
26
tsv
12
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
165
Homo sapiens
Biosample type
157
tissue
8
primary cell
Organ
689
pancreas
593
connective tissue
442
adipose tissue
367
liver
311
epithelium
211
heart
179
vasculature
177
blood vessel
165
brain
144
kidney
114
limb
102
artery
66
bone element
60
blood
60
bodily fluid
57
musculature of body
42
nerve
36
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
165
AMP
Genome assembly (visualization)
152
GRCh38
141
hg19
Lab
165
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
month_released!
November, 2017
BIOSAMPLE
ASSAY
165 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
ATAC-seq
FAIRE-seq
tissue
brain
13
14
1
temporal lobe
15
1
1
angular gyrus
15
cerebellum (Hemisphere)
2
1
1
1
frontal cortex
2
1
1
1
+ See 69 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain microvascular endothelial cell
1
+ See 2 more…
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