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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
ChIP-seq
32
DNase-seq
5
total RNA-seq
small RNA-seq
3
single cell RNA-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
118
DNA binding
35
DNA accessibility
8
Transcription
Target of assay
106
histone
106
histone modification
83
narrow histone mark
23
broad histone mark
15
control
Date released
83
October, 2019
November, 2017
30
June, 2019
28
May, 2019
9
July, 2019
9
October, 2017
2
November, 2018
Available data
161
bam
152
bigWig
139
bed narrowPeak
64
bigBed narrowPeak
52
tagAlign
35
bed bed3+
35
bed broadPeak
32
bigBed broadPeak
22
tsv
12
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
161
Homo sapiens
Biosample type
153
tissue
8
primary cell
Organ
687
pancreas
590
connective tissue
439
adipose tissue
364
liver
311
epithelium
210
heart
179
vasculature
177
blood vessel
161
brain
143
kidney
114
limb
102
artery
66
bone element
60
blood
60
bodily fluid
55
musculature of body
42
nerve
36
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
161
AMP
Genome assembly (visualization)
148
GRCh38
137
hg19
Lab
161
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
month_released!
November, 2017
assay_title!
small RNA-seq
BIOSAMPLE
ASSAY
161 results
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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
FAIRE-seq
tissue
brain
13
14
1
temporal lobe
15
1
angular gyrus
15
cerebellum (Hemisphere)
2
1
1
frontal cortex
2
1
1
+ See 69 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain microvascular endothelial cell
1
+ See 2 more…
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