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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
400
total RNA-seq
155
ChIP-seq
34
DNase-seq
small RNA-seq
5
ATAC-seq
3
single cell RNA-seq
2
WGBS
1
FAIRE-seq
Assay category
403
Transcription
155
DNA binding
40
DNA accessibility
2
DNA methylation
Target of assay
107
histone
107
histone modification
84
narrow histone mark
34
control
23
broad histone mark
17
transcription factor
5
RNA binding protein
Date released
386
February, 2021
83
October, 2019
November, 2017
31
June, 2019
28
May, 2019
23
October, 2018
18
July, 2019
17
August, 2017
10
October, 2017
3
November, 2018
1
November, 2019
Available data
600
bam
574
bigWig
420
tsv
152
bed narrowPeak
74
bigBed narrowPeak
60
tagAlign
56
fastq
41
bed bed3+
38
bed broadPeak
34
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
3
hdf5
1
bed bed3
1
bedpe bed3+
1
tagAlign bed3+
Organism
600
Homo sapiens
Biosample type
591
tissue
9
primary cell
Organ
687
pancreas
590
connective tissue
439
adipose tissue
364
liver
311
epithelium
210
heart
179
vasculature
177
blood vessel
161
brain
143
kidney
114
limb
102
artery
66
bone element
60
blood
60
bodily fluid
55
musculature of body
42
nerve
36
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
600
AMP
Genome assembly (visualization)
568
GRCh38
555
hg19
Lab
600
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
15
missing controlled_by
month_released!
November, 2017
assay_title!
small RNA-seq
BIOSAMPLE
ASSAY
600 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
WGBS
FAIRE-seq
tissue
adipose tissue
381
2
2
brain
1
13
14
subcutaneous adipose tissue
6
12
1
omental fat pad
4
11
2
1
temporal lobe
1
15
+ See 75 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain microvascular endothelial cell
1
+ See 3 more…
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