Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
ChIP-seq
32
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
197
DNA binding
35
DNA accessibility
12
Transcription
3
3D chromatin structure
Target of assay
167
histone
167
histone modification
106
narrow histone mark
61
broad histone mark
30
control
3
RNA binding protein
3
transcription factor
Date released
83
October, 2019
79
November, 2017
30
June, 2019
28
May, 2019
16
July, 2019
9
October, 2017
2
November, 2018
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
247
Homo sapiens
Biosample type
227
tissue
20
primary cell
Organ
716
liver
711
pancreas
601
connective tissue
445
adipose tissue
331
epithelium
252
heart
247
brain
187
vasculature
182
blood vessel
144
kidney
114
limb
102
artery
71
musculature of body
66
bone element
blood
61
bodily fluid
42
nerve
37
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
247
AMP
Genome assembly (visualization)
215
GRCh38
159
hg19
Lab
247
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
organ_slims!
blood
BIOSAMPLE
ASSAY
247 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
ATAC-seq
FAIRE-seq
tissue
brain
13
14
1
layer of hippocampus
20
temporal lobe
15
1
1
angular gyrus
15
caudate nucleus
14
1
+ See 71 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
See all biosamples
Download