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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
ChIP-seq
63
total RNA-seq
32
DNase-seq
10
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
1
FAIRE-seq
Assay category
196
DNA binding
70
Transcription
43
DNA accessibility
Target of assay
166
histone
166
histone modification
105
narrow histone mark
61
broad histone mark
30
control
3
RNA binding protein
3
transcription factor
Date released
83
October, 2019
78
November, 2017
66
February, 2021
30
June, 2019
28
May, 2019
13
July, 2019
9
October, 2017
2
November, 2018
Available data
309
bam
280
bigWig
211
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
88
txt
84
tsv
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
21
fastq
5
bed bed3
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
309
Homo sapiens
Biosample type
292
tissue
17
primary cell
Organ
689
pancreas
681
liver
593
connective tissue
442
adipose tissue
317
epithelium
243
brain
211
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
66
bone element
60
blood
60
bodily fluid
57
musculature of body
42
nerve
36
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
309
AMP
Genome assembly (visualization)
281
GRCh38
221
hg19
Lab
309
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
BIOSAMPLE
ASSAY
309 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
FAIRE-seq
tissue
bone tissue
58
brain
13
1
14
layer of hippocampus
20
temporal lobe
15
1
1
angular gyrus
15
+ See 80 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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