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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
169
ChIP-seq
63
total RNA-seq
32
DNase-seq
10
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
Assay category
169
DNA binding
70
Transcription
42
DNA accessibility
Target of assay
166
histone
166
histone modification
105
narrow histone mark
61
broad histone mark
3
RNA binding protein
3
control
3
transcription factor
Date released
76
October, 2019
66
February, 2021
63
November, 2017
30
June, 2019
25
May, 2019
12
July, 2019
7
October, 2017
2
November, 2018
Available data
281
bam
272
bigWig
209
bed narrowPeak
126
bigBed narrowPeak
82
tagAlign
70
tsv
46
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
15
fastq
1
tagAlign bed3+
Organism
281
Homo sapiens
Biosample type
267
tissue
14
primary cell
Organ
621
pancreas
565
connective tissue
531
liver
423
adipose tissue
284
epithelium
215
brain
191
heart
156
vasculature
152
blood vessel
130
kidney
96
limb
93
artery
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
281
AMP
Genome assembly (visualization)
281
GRCh38
221
hg19
Lab
281
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
BIOSAMPLE
ASSAY
281 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
tissue
bone tissue
58
brain
11
1
14
layer of hippocampus
17
temporal lobe
13
1
1
angular gyrus
14
+ See 80 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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