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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
213
ChIP-seq
65
DNase-seq
9
total RNA-seq
6
small RNA-seq
3
single cell RNA-seq
2
ATAC-seq
1
FAIRE-seq
1
WGBS
Assay category
213
DNA binding
68
DNA accessibility
18
Transcription
1
DNA methylation
Target of assay
180
histone
180
histone modification
111
narrow histone mark
69
broad histone mark
33
control
3
RNA binding protein
3
transcription factor
Date released
83
October, 2019
78
November, 2017
73
June, 2019
35
May, 2019
18
July, 2019
9
October, 2017
2
March, 2020
2
November, 2018
Available data
300
bam
290
bigWig
263
bed narrowPeak
174
bigBed narrowPeak
133
tagAlign
93
bed broadPeak
71
bigBed broadPeak
69
bed bed3+
35
tsv
23
fastq
6
bed bedMethyl
6
bigBed bedMethyl
3
hdf5
2
bedpe bed3+
2
hic
1
bed bed3
1
tagAlign bed3+
1
txt
Organism
300
Homo sapiens
Biosample type
270
tissue
30
primary cell
Organ
689
pancreas
681
liver
593
connective tissue
442
adipose tissue
317
epithelium
243
brain
211
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
66
bone element
60
blood
60
bodily fluid
57
musculature of body
42
nerve
36
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
300
AMP
Genome assembly (visualization)
268
GRCh38
208
hg19
Lab
300
AMP-T2D consortium
Audit category:
11
inconsistent ontology term
Audit category:
3
missing controlled_by
BIOSAMPLE
ASSAY
300 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
ATAC-seq
FAIRE-seq
WGBS
tissue
brain
13
14
1
muscle of leg
7
13
1
layer of hippocampus
20
muscle of arm
17
temporal lobe
15
1
1
+ See 77 more…
primary cell
skeletal muscle satellite cell
8
1
1
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
skeletal muscle cell
2
1
+ See 4 more…
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