Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
213
ChIP-seq
34
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
ATAC-seq
2
FAIRE-seq
Assay category
213
DNA binding
38
DNA accessibility
12
Transcription
Target of assay
181
histone
181
histone modification
111
narrow histone mark
70
broad histone mark
32
control
3
RNA binding protein
3
transcription factor
Date released
103
October, 2019
78
November, 2017
30
June, 2019
28
May, 2019
13
July, 2019
9
October, 2017
2
November, 2018
Available data
263
bam
237
bigWig
216
bed narrowPeak
140
bigBed narrowPeak
118
tagAlign
51
bed broadPeak
42
bigBed broadPeak
37
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bed bed3
1
bedpe bed3+
1
tagAlign bed3+
1
tar
Organism
263
Homo sapiens
Biosample type
226
tissue
37
primary cell
Organ
689
pancreas
681
liver
593
connective tissue
442
adipose tissue
317
epithelium
243
brain
211
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
66
bone element
60
blood
60
bodily fluid
57
musculature of body
42
nerve
36
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
263
AMP
Genome assembly (visualization)
227
GRCh38
170
hg19
Lab
263
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
BIOSAMPLE
ASSAY
263 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
ATAC-seq
FAIRE-seq
tissue
brain
13
14
1
layer of hippocampus
20
temporal lobe
15
1
1
angular gyrus
15
caudate nucleus
14
1
+ See 71 more…
primary cell
endothelial cell of umbilical vein
17
2
1
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
cerebellar granule cell
2
+ See 3 more…
See all biosamples
Download