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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
193
ChIP-seq
32
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
193
DNA binding
35
DNA accessibility
12
Transcription
Target of assay
166
histone
166
histone modification
105
narrow histone mark
61
broad histone mark
30
control
RNA binding protein
3
transcription factor
Date released
83
October, 2019
75
November, 2017
30
June, 2019
28
May, 2019
13
July, 2019
9
October, 2017
2
November, 2018
Available data
240
bam
219
bigWig
200
bed narrowPeak
124
bigBed narrowPeak
118
tagAlign
44
bed broadPeak
35
bed bed3+
35
bigBed broadPeak
26
tsv
18
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
240
Homo sapiens
Biosample type
226
tissue
14
primary cell
Organ
680
pancreas
624
liver
583
connective tissue
437
adipose tissue
309
epithelium
240
brain
205
heart
180
vasculature
176
blood vessel
141
kidney
114
limb
101
artery
66
bone element
57
musculature of body
50
blood
50
bodily fluid
42
nerve
36
embryo
24
spleen
20
vein
18
ureter
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
240
AMP
Genome assembly (visualization)
212
GRCh38
152
hg19
Lab
240
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
240 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
ATAC-seq
FAIRE-seq
tissue
brain
13
14
1
layer of hippocampus
20
temporal lobe
15
1
1
angular gyrus
15
caudate nucleus
14
1
+ See 71 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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