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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
224
ChIP-seq
32
DNase-seq
1
FAIRE-seq
Assay category
224
DNA binding
33
DNA accessibility
Target of assay
168
histone
168
histone modification
107
narrow histone mark
61
broad histone mark
54
transcription factor
13
RNA binding protein
10
chromatin remodeller
Date released
75
October, 2019
64
November, 2017
30
June, 2019
27
December, 2018
25
May, 2019
15
January, 2019
14
November, 2018
6
October, 2017
1
July, 2019
Available data
303
bam
277
bigWig
257
bed narrowPeak
181
bigBed narrowPeak
118
tagAlign
81
fastq
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
257
Homo sapiens
Biosample type
192
tissue
54
cell line
11
primary cell
Organ
441
liver
214
pancreas
203
brain
183
kidney
151
epithelium
151
heart
133
vasculature
129
blood vessel
92
limb
75
connective tissue
74
artery
60
musculature of body
54
blood
54
bodily fluid
33
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
adipose tissue
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
257
AMP
Genome assembly (visualization)
255
GRCh38
195
hg19
Lab
257
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
inconsistent control
Audit category:
3
missing controlled_by
BIOSAMPLE
ASSAY
257 results
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ChIP-seq
DNase-seq
FAIRE-seq
tissue
brain
11
14
layer of hippocampus
17
angular gyrus
14
caudate nucleus
12
1
temporal lobe
13
+ See 68 more…
cell line
GM12878
54
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
astrocyte of the hippocampus
1
brain pericyte
1
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