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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
109
ChIP-seq
32
DNase-seq
1
FAIRE-seq
Assay category
109
DNA binding
33
DNA accessibility
Target of assay
167
histone
167
histone modification
106
narrow histone mark
broad histone mark
3
RNA binding protein
3
transcription factor
Date released
72
October, 2019
30
June, 2019
26
November, 2017
10
May, 2019
2
November, 2018
1
July, 2019
1
October, 2017
Available data
182
bam
162
bigWig
142
bed narrowPeak
73
tagAlign
69
bigBed narrowPeak
43
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
15
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
142
Homo sapiens
Biosample type
131
tissue
11
primary cell
Organ
412
liver
168
kidney
146
pancreas
142
brain
114
heart
111
epithelium
92
vasculature
88
blood vessel
60
artery
59
connective tissue
58
limb
54
blood
54
bodily fluid
44
musculature of body
33
eye
18
ureter
13
adipose tissue
11
nerve
10
embryo
10
spleen
8
bone element
8
skeleton
8
vein
1
pituitary gland
Project
142
AMP
Genome assembly (visualization)
140
GRCh38
116
hg19
Lab
142
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
142 results
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ChIP-seq
DNase-seq
FAIRE-seq
tissue
brain
3
14
angular gyrus
7
layer of hippocampus
7
caudate nucleus
4
1
temporal lobe
5
+ See 68 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
astrocyte of the hippocampus
1
brain pericyte
1
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