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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
pCHi-C
1
FAIRE-seq
Assay category
94
DNA binding
33
DNA accessibility
24
Transcription
Target of assay
91
histone
91
histone modification
58
broad histone mark
33
narrow histone mark
3
RNA binding protein
3
control
3
transcription factor
Date released
63
November, 2017
30
June, 2019
25
May, 2019
12
February, 2020
12
July, 2019
6
October, 2017
2
March, 2020
2
November, 2018
1
October, 2019
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
153
Homo sapiens
Biosample type
139
tissue
14
primary cell
Organ
532
liver
508
pancreas
506
connective tissue
411
adipose tissue
262
heart
232
epithelium
153
brain
151
vasculature
147
blood vessel
128
kidney
91
limb
83
artery
58
bone element
56
musculature of body
54
blood
54
bodily fluid
31
nerve
18
ureter
14
embryo
14
spleen
13
vein
11
eye
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
153
AMP
Genome assembly (visualization)
138
GRCh38
77
hg19
Lab
153
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
BIOSAMPLE
ASSAY
153 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
pCHi-C
FAIRE-seq
tissue
brain
6
14
1
layer of hippocampus
16
temporal lobe
13
1
1
caudate nucleus
12
1
1
angular gyrus
12
+ See 22 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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