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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
5
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
DNase-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
218
DNA binding
12
Transcription
7
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
June, 2019
28
May, 2019
18
July, 2019
16
October, 2017
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
213
bam
192
bigWig
173
bed narrowPeak
118
tagAlign
97
bigBed narrowPeak
21
fastq
17
bed broadPeak
14
tsv
8
bigBed broadPeak
5
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
244
Homo sapiens
Biosample type
228
tissue
16
primary cell
Organ
941
pancreas
788
liver
664
connective tissue
504
epithelium
488
adipose tissue
315
heart
273
kidney
244
brain
226
vasculature
222
blood vessel
159
bone element
137
artery
87
limb
69
blood
69
bodily fluid
53
eye
51
musculature of body
42
nerve
37
embryo
25
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
244
AMP
Genome assembly (visualization)
187
GRCh38
144
hg19
Lab
244
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
February, 2020
June, 2019
BIOSAMPLE
ASSAY
244 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
DNase-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
20
1
1
2
1
layer of hippocampus
23
temporal lobe
15
1
1
substantia nigra
16
angular gyrus
15
+ See 70 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
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