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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
ChIP-seq
27
DNase-seq
17
total RNA-seq
4
small RNA-seq
3
ATAC-seq
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
209
DNA binding
31
DNA accessibility
21
Transcription
1
DNA methylation
Target of assay
184
histone
184
histone modification
114
narrow histone mark
70
broad histone mark
25
control
Date released
86
October, 2019
82
November, 2017
28
May, 2019
25
June, 2019
16
October, 2017
12
February, 2020
11
July, 2019
2
March, 2020
2
November, 2018
February, 2023
Available data
226
bam
202
bigWig
192
bed narrowPeak
118
tagAlign
116
bigBed narrowPeak
36
bed broadPeak
27
bed bed3+
27
bigBed broadPeak
23
tsv
12
fastq
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
264
Homo sapiens
Biosample type
264
tissue
21
primary cell
Organ
546
connective tissue
487
adipose tissue
487
pancreas
361
liver
299
kidney
264
brain
237
heart
150
bone element
122
limb
98
blood vessel
98
vasculature
82
musculature of body
43
nerve
38
artery
25
eye
25
spleen
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
264
AMP
Genome assembly (visualization)
203
GRCh38
142
hg19
Lab
264
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
February, 2023
BIOSAMPLE
ASSAY
264 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
pCHi-C
FAIRE-seq
RRBS
tissue
brain
20
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
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