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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
203
ChIP-seq
13
total RNA-seq
3
ATAC-seq
2
pCHi-C
Assay category
203
DNA binding
13
Transcription
3
DNA accessibility
Target of assay
175
histone
175
histone modification
109
narrow histone mark
66
broad histone mark
28
control
Date released
86
October, 2019
79
November, 2017
28
May, 2019
July, 2019
13
October, 2017
12
February, 2020
2
March, 2020
1
February, 2023
Available data
230
bam
206
bigWig
202
bed narrowPeak
126
bigBed narrowPeak
118
tagAlign
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
21
fastq
15
tsv
1
bed bed3
1
tagAlign bed3+
Organism
221
Homo sapiens
Biosample type
218
tissue
3
primary cell
Organ
919
pancreas
718
liver
656
connective tissue
489
epithelium
476
adipose tissue
298
heart
265
kidney
221
brain
207
vasculature
206
blood vessel
159
bone element
134
artery
81
limb
69
blood
69
bodily fluid
56
eye
41
nerve
40
musculature of body
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
221
AMP
Genome assembly (visualization)
159
GRCh38
110
hg19
Lab
221
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
month_released!
July, 2019
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
221 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
tissue
layer of hippocampus
23
brain
17
1
1
substantia nigra
15
1
angular gyrus
15
caudate nucleus
14
1
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primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
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