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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
13
total RNA-seq
3
ATAC-seq
2
DNase-seq
2
pCHi-C
Assay category
218
DNA binding
13
Transcription
5
DNA accessibility
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
June, 2019
28
May, 2019
July, 2019
16
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
200
bam
176
bigWig
172
bed narrowPeak
118
tagAlign
96
bigBed narrowPeak
21
fastq
17
bed broadPeak
15
tsv
8
bigBed broadPeak
2
bed bed3+
1
bed bed3
1
tagAlign bed3+
Organism
238
Homo sapiens
Biosample type
229
tissue
9
primary cell
Organ
936
pancreas
779
liver
648
connective tissue
491
epithelium
478
adipose tissue
293
heart
262
kidney
238
brain
217
vasculature
214
blood vessel
159
bone element
136
artery
85
limb
69
blood
69
bodily fluid
53
eye
43
musculature of body
43
nerve
37
embryo
25
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
238
AMP
Genome assembly (visualization)
175
GRCh38
127
hg19
Lab
238
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
July, 2019
June, 2019
BIOSAMPLE
ASSAY
238 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
pCHi-C
tissue
brain
20
1
1
2
layer of hippocampus
23
substantia nigra
16
1
caudate nucleus
15
1
angular gyrus
15
+ See 70 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
See all biosamples
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