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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
ChIP-seq
32
DNase-seq
13
total RNA-seq
3
ATAC-seq
2
pCHi-C
Assay category
127
DNA binding
35
DNA accessibility
13
Transcription
Target of assay
114
histone
114
histone modification
86
narrow histone mark
28
broad histone mark
13
control
Date released
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
July, 2019
16
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
152
bam
140
bigWig
138
bed narrowPeak
63
bigBed narrowPeak
52
tagAlign
35
bed broadPeak
32
bed bed3+
32
bigBed broadPeak
15
tsv
12
fastq
1
bed bed3
1
tagAlign bed3+
Organism
177
Homo sapiens
Biosample type
172
tissue
5
primary cell
Organ
940
pancreas
666
connective tissue
505
epithelium
479
adipose tissue
466
liver
343
kidney
328
heart
218
vasculature
216
blood vessel
177
brain
159
bone element
138
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
177
AMP
Genome assembly (visualization)
142
GRCh38
132
hg19
Lab
177
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
July, 2019
November, 2017
BIOSAMPLE
ASSAY
177 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
pCHi-C
tissue
brain
20
14
1
1
angular gyrus
15
temporal lobe
15
cerebellum (Hemisphere)
2
1
1
1
putamen
2
1
1
+ See 73 more…
primary cell
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
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