Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
148
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
FAIRE-seq
Assay category
148
DNA binding
36
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
83
October, 2019
49
November, 2017
30
June, 2019
17
July, 2019
13
May, 2019
12
February, 2020
6
October, 2017
March, 2020
2
November, 2018
1
February, 2023
Available data
181
bam
161
bigWig
141
bed narrowPeak
73
tagAlign
68
bigBed narrowPeak
43
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
24
tsv
15
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
213
Homo sapiens
Biosample type
192
tissue
21
primary cell
Organ
852
pancreas
746
liver
638
connective tissue
473
epithelium
470
adipose tissue
336
kidney
329
heart
213
brain
186
vasculature
180
blood vessel
159
bone element
127
artery
88
limb
71
musculature of body
69
blood
69
bodily fluid
61
eye
33
embryo
27
nerve
20
spleen
19
lung
18
ureter
16
skeleton
11
vein
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
213
AMP
Genome assembly (visualization)
156
GRCh38
138
hg19
Lab
213
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
month_released!
March, 2020
assay_title!
FAIRE-seq
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
213 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
tissue
brain
7
14
1
1
1
layer of hippocampus
11
caudate nucleus
7
1
1
substantia nigra
8
1
temporal lobe
7
1
1
+ See 76 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
See all biosamples
Download