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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
145
ChIP-seq
32
DNase-seq
1
FAIRE-seq
Assay category
145
DNA binding
33
DNA accessibility
Target of assay
142
histone
142
histone modification
96
narrow histone mark
46
broad histone mark
3
RNA binding protein
3
transcription factor
Date released
75
October, 2019
64
November, 2017
30
June, 2019
May, 2019
6
October, 2017
2
November, 2018
1
July, 2019
Available data
215
bam
197
bigWig
178
bed narrowPeak
118
tagAlign
102
bigBed narrowPeak
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
24
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
178
Homo sapiens
Biosample type
167
tissue
11
primary cell
Organ
441
liver
210
pancreas
179
kidney
178
brain
176
heart
146
epithelium
94
vasculature
90
blood vessel
86
limb
75
connective tissue
71
artery
54
blood
54
bodily fluid
54
musculature of body
33
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
adipose tissue
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
178
AMP
Genome assembly (visualization)
176
GRCh38
116
hg19
Lab
178
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
month_released!
March, 2020
May, 2019
BIOSAMPLE
ASSAY
178 results
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ChIP-seq
DNase-seq
FAIRE-seq
tissue
brain
11
14
layer of hippocampus
17
caudate nucleus
12
1
substantia nigra
12
middle frontal area 46
11
+ See 67 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
astrocyte of the hippocampus
1
brain pericyte
1
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