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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
324
ChIP-seq
303
total RNA-seq
64
ATAC-seq
34
DNase-seq
11
snATAC-seq
6
small RNA-seq
4
MeRIP-seq
4
WGBS
3
FAIRE-seq
3
Hi-C
3
RRBS
Assay category
324
DNA binding
309
Transcription
112
DNA accessibility
7
DNA methylation
3
3D chromatin structure
Target of assay
255
histone
255
histone modification
144
narrow histone mark
111
broad histone mark
54
control
17
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
147
August, 2017
120
July, 2018
89
October, 2019
82
November, 2017
51
October, 2018
39
November, 2019
37
May, 2021
30
May, 2019
29
June, 2019
24
May, 2022
21
October, 2017
19
February, 2023
17
July, 2019
13
February, 2020
March, 2020
9
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
August, 2021
1
August, 2022
Available data
652
bam
570
bigWig
313
bed narrowPeak
293
tsv
225
fastq
178
bigBed narrowPeak
134
tagAlign
56
bed broadPeak
54
bed bed3+
33
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
txt
2
bedpe bed3+
2
hic
1
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
752
Homo sapiens
Biosample type
759
tissue
367
primary cell
87
cell line
3
in vitro differentiated cells
Organ
546
connective tissue
496
pancreas
487
adipose tissue
358
liver
299
kidney
266
heart
263
brain
158
bone element
130
blood vessel
130
vasculature
122
limb
77
musculature of body
73
artery
56
eye
43
nerve
24
spleen
19
lung
18
ureter
16
skeleton
15
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
1
thymus
Project
733
AMP
26
T1D
Genome assembly (visualization)
586
GRCh38
550
hg19
Lab
696
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
1
audit script error
Audit category:
14
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
month_released!
March, 2020
BIOSAMPLE
ASSAY
759 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
snATAC-seq
small RNA-seq
MeRIP-seq
WGBS
FAIRE-seq
Hi-C
RRBS
tissue
islet of Langerhans
48
282
57
1
7
4
1
3
1
body of pancreas
35
3
4
4
2
2
brain
20
1
1
14
1
pancreas
16
1
2
4
2
1
1
layer of hippocampus
23
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