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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
2
RRBS
1
FAIRE-seq
Assay category
190
DNA binding
37
DNA accessibility
21
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
control
3
RNA binding protein
3
transcription factor
Date released
79
October, 2019
76
November, 2017
30
June, 2019
25
May, 2019
15
July, 2019
13
October, 2017
12
February, 2020
March, 2020
2
November, 2018
1
February, 2023
Available data
216
bigWig
213
bam
203
bed narrowPeak
127
bigBed narrowPeak
99
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
21
tsv
16
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
253
Homo sapiens
Biosample type
238
tissue
15
primary cell
Organ
879
pancreas
680
liver
647
connective tissue
488
epithelium
466
adipose tissue
340
kidney
326
heart
253
brain
210
vasculature
205
blood vessel
159
bone element
132
artery
105
limb
85
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
19
lung
19
vein
18
ureter
16
skeleton
16
spleen
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
253
AMP
Genome assembly (visualization)
214
GRCh38
158
hg19
Lab
253
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
March, 2020
target.investigated_as!
control
BIOSAMPLE
ASSAY
253 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
FAIRE-seq
tissue
brain
17
14
1
1
1
layer of hippocampus
20
caudate nucleus
13
1
1
substantia nigra
14
1
temporal lobe
13
1
1
+ See 76 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
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