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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
191
ChIP-seq
32
DNase-seq
4
ATAC-seq
3
Hi-C
2
RRBS
1
FAIRE-seq
Assay category
191
DNA binding
37
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
188
histone
188
histone modification
118
narrow histone mark
70
broad histone mark
control
3
RNA binding protein
3
transcription factor
Date released
79
October, 2019
76
November, 2017
30
June, 2019
25
May, 2019
13
October, 2017
7
July, 2019
2
November, 2018
1
February, 2023
Available data
216
bigWig
213
bam
203
bed narrowPeak
127
bigBed narrowPeak
99
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
tsv
16
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
233
Homo sapiens
Biosample type
218
tissue
15
primary cell
Organ
508
liver
468
pancreas
335
epithelium
318
kidney
232
brain
203
heart
171
connective tissue
144
vasculature
139
blood vessel
101
bone element
98
limb
79
musculature of body
74
artery
66
adipose tissue
63
blood
63
bodily fluid
55
eye
27
nerve
19
lung
19
vein
18
ureter
16
embryo
16
skeleton
16
spleen
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
233
AMP
Genome assembly (visualization)
205
GRCh38
149
hg19
Lab
233
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
March, 2020
target.investigated_as!
control
files.file_type!
tsv
BIOSAMPLE
ASSAY
233 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
FAIRE-seq
tissue
brain
17
14
1
1
layer of hippocampus
20
angular gyrus
14
caudate nucleus
13
1
substantia nigra
14
+ See 72 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
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