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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ChIP-seq
30
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
100
DNA binding
35
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
88
histone
88
histone modification
63
narrow histone mark
25
broad histone mark
12
control
3
RNA binding protein
3
transcription factor
Date released
48
October, 2019
30
June, 2019
28
May, 2019
25
November, 2017
18
July, 2019
12
February, 2020
2
March, 2020
November, 2018
2
October, 2017
1
February, 2023
Available data
241
bam
220
bigWig
201
bed narrowPeak
125
bigBed narrowPeak
tagAlign
45
bed broadPeak
36
bigBed broadPeak
33
bed bed3+
26
tsv
19
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
166
Homo sapiens
Biosample type
145
tissue
21
primary cell
Organ
920
pancreas
661
connective tissue
652
liver
517
epithelium
482
adipose tissue
387
heart
354
kidney
230
vasculature
224
blood vessel
166
brain
159
bone element
135
artery
122
limb
81
musculature of body
61
eye
54
blood
54
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
ureter
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
166
AMP
Genome assembly (visualization)
133
GRCh38
119
hg19
Lab
166
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
month_released!
November, 2018
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
166 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
6
12
1
1
1
temporal lobe
15
1
1
angular gyrus
13
layer of hippocampus
8
cerebellum (Hemisphere)
2
1
1
1
1
+ See 57 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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