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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
ChIP-seq
1
FAIRE-seq
Assay category
170
DNA binding
1
DNA accessibility
Target of assay
167
histone
167
histone modification
106
narrow histone mark
61
broad histone mark
3
RNA binding protein
3
transcription factor
Date released
75
October, 2019
64
November, 2017
25
May, 2019
6
October, 2017
1
July, 2019
Available data
241
bam
220
bigWig
201
bed narrowPeak
125
bigBed narrowPeak
118
tagAlign
45
bed broadPeak
36
bigBed broadPeak
bed bed3+
26
tsv
19
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
171
Homo sapiens
Biosample type
165
tissue
6
primary cell
Organ
383
liver
196
pancreas
171
brain
161
heart
132
epithelium
122
vasculature
120
blood vessel
105
kidney
70
artery
61
connective tissue
56
limb
42
blood
42
bodily fluid
29
eye
27
musculature of body
25
nerve
12
embryo
11
adipose tissue
11
vein
10
spleen
8
bone element
8
skeleton
1
pituitary gland
Project
171
AMP
Genome assembly (visualization)
169
GRCh38
119
hg19
Lab
171
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
month_released!
November, 2018
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
171 results
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ChIP-seq
FAIRE-seq
tissue
layer of hippocampus
17
angular gyrus
14
temporal lobe
13
caudate nucleus
12
substantia nigra
12
+ See 62 more…
primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
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