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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
210
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
Hi-C
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
210
DNA binding
24
Transcription
5
DNA accessibility
2
3D chromatin structure
1
DNA methylation
Target of assay
184
histone
184
histone modification
114
narrow histone mark
70
broad histone mark
29
control
Date released
86
October, 2019
83
November, 2017
28
May, 2019
16
July, 2019
16
October, 2017
12
February, 2020
2
March, 2020
1
February, 2023
Available data
233
bam
211
bigWig
195
bed narrowPeak
119
bigBed narrowPeak
118
tagAlign
39
bed broadPeak
30
bed bed3+
bigBed broadPeak
26
tsv
13
fastq
2
hdf5
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
244
Homo sapiens
Biosample type
238
tissue
6
primary cell
Organ
934
pancreas
678
liver
675
connective tissue
502
epithelium
489
adipose tissue
363
heart
276
kidney
248
brain
vasculature
217
blood vessel
159
bone element
137
artery
86
limb
63
musculature of body
57
eye
54
blood
54
bodily fluid
41
nerve
37
embryo
20
lung
18
vein
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
244
AMP
Genome assembly (visualization)
179
GRCh38
132
hg19
Lab
244
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
November, 2018
files.file_type!
bigBed broadPeak
organ_slims!
vasculature
BIOSAMPLE
ASSAY
244 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
Hi-C
pCHi-C
FAIRE-seq
RRBS
tissue
brain
20
1
1
1
layer of hippocampus
23
substantia nigra
16
1
temporal lobe
15
1
1
caudate nucleus
15
1
+ See 72 more…
primary cell
astrocyte of the cerebellum
1
1
cerebellar granule cell
2
Purkinje cell
1
brain pericyte
1
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