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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
203
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
203
DNA binding
24
Transcription
5
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
175
histone
175
histone modification
109
narrow histone mark
66
broad histone mark
31
control
Date released
86
October, 2019
79
November, 2017
28
May, 2019
18
July, 2019
13
October, 2017
12
February, 2020
2
March, 2020
1
February, 2023
Available data
241
bam
220
bigWig
201
bed narrowPeak
125
bigBed narrowPeak
118
tagAlign
bed broadPeak
36
bigBed broadPeak
33
bed bed3+
26
tsv
19
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
239
Homo sapiens
Biosample type
229
tissue
10
primary cell
Organ
920
pancreas
678
liver
674
connective tissue
502
epithelium
488
adipose tissue
363
heart
kidney
239
brain
219
vasculature
217
blood vessel
159
bone element
137
artery
86
limb
57
eye
54
blood
54
bodily fluid
50
musculature of body
41
nerve
37
embryo
20
lung
18
vein
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
239
AMP
Genome assembly (visualization)
171
GRCh38
127
hg19
Lab
239
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
month_released!
November, 2018
organ_slims!
kidney
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
239 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
layer of hippocampus
23
brain
17
1
1
1
temporal lobe
15
1
1
substantia nigra
15
1
angular gyrus
15
+ See 72 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
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